Visual analysis in Atomes

In this chapter examples will be illustrated using an Atomes workspace presented in figure 5.1, this workspace contains 3 different projects:

• a molecular surface of Nickel-Phthalocyanine molecules with 512 atoms.

• a SiO\(_2\) glass with 3000 atoms.

• a GeS\(_2\) glass molecular dynamics trajectory with 500 MD steps and 258 atoms.

• Window top bar menu
  • The OpenGL menu
  • The Model menu
  • The Chemistry menu
  • The Tools menu
  • The View menu
  • The Animate menu
• Mouse interaction with the OpenGL window: visualization
  • Object selection
  • Object contextual menu
• Keyboard shortcuts