Visual analysis in Atomes

In this chapter examples will be illustrated using an Atomes workspace presented in figure 5.1, this workspace contains 3 different projects:

  • a molecular surface of Nickel-Phthalocyanine molecules with 512 atoms.

  • a SiO\(_2\) glass with 3000 atoms.

  • a GeS\(_2\) glass molecular dynamics trajectory with 500 MD steps and 258 atoms.

Example workspace to illustrate the visualization capabilities of the Atomes program containing 3 projects, named "Ni-Phth", "g-SiO_2" and "l-GeS_2".